| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| D K Saka. Significance of Extracellular Protease for Growth of a Heterotrophic Bacterium, Aeromonas salmonicida. Applied and environmental microbiology. vol 50. issue 4. 2010-06-25. PMID:16346900. |
strain a-7301 produced extracellular protease in a mixed amino acid medium (composed of gly, ala, val, ile, leu, thr, ser, cys, met, phe, tyr, lys, arg, pro, his, try, asp, asn, glu, and gln at equal concentrations of 0.1 g/liter). |
2010-06-25 |
2023-08-12 |
Not clear |
| T A Woyengo, E Kiarie, C M Nyachot. Energy and amino acid utilization in expeller-extracted canola meal fed to growing pigs. Journal of animal science. vol 88. issue 4. 2010-06-14. PMID:20023126. |
the sid contents of arg, his, ile, leu, phe, val, ala, asp, glu, gly, pro, and tyr were also greater (p < 0.05) for eecm than for secm by an average of 15%. |
2010-06-14 |
2023-08-12 |
Not clear |
| Lindsay J Sperling, Deborah A Berthold, Terry L Sasser, Victoria Jeisy-Scott, Chad M Rienstr. Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA. Journal of molecular biology. vol 399. issue 2. 2010-06-07. PMID:20394752. |
assignments by amino acid type were facilitated by particular combinations of pulse sequences and isotopic labeling; for example, transferred echo double resonance experiments enhanced sensitivity for pro and gly residues; [2-(13)c]glycerol labeling clarified val, ile, and leu assignments; in-phase anti-phase correlation spectra enabled interpretation of otherwise crowded glx/asx side-chain regions; and 3d ncacx experiments on [2-(13)c]glycerol samples provided unique sets of aromatic (phe, tyr, and trp) correlations. |
2010-06-07 |
2023-08-12 |
Not clear |
| Marcus P D Hatfield, Richard F Murphy, Sándor Lova. Molecular dynamics analysis of the conformations of a beta-hairpin miniprotein. The journal of physical chemistry. B. vol 114. issue 8. 2010-05-20. PMID:20148510. |
molecular dynamics simulations of a beta-hairpin miniprotein, cln025, were performed to examine the conformational stability of the peptide in h(2)o at 278, 300, 333, and 363 k, as well as in tfe, meoh, and dmso at 300 k. cln025 is a variant of the chignolin miniprotein, in which the terminal gly residues of chignolin are replaced with tyr residues, which leads to a 29.7 k increase in melting temperature. |
2010-05-20 |
2023-08-12 |
Not clear |
| Norihiro Kobayashi, Hiroyuki Oyama, Yoshinori Kato, Junichi Goto, Eskil Söderlind, Carl A K Borrebaec. Two-step in vitro antibody affinity maturation enables estradiol-17beta assays with more than 10-fold higher sensitivity. Analytical chemistry. vol 82. issue 3. 2010-05-18. PMID:20047279. |
from this library, we found an improved clone, scfv#m2-c4 (k(a) = 6.3 x 10(8) m(-1); lys(h19)arg, tyr(h56)phe, ser(h84)pro, glu(h85)gly, gln(l27)arg, leu(l36)met, ser(l63)gly, and ser(l77)gly). |
2010-05-18 |
2023-08-12 |
mouse |
| Marek Sebela, Pavel Rehulka, Jaromír Kábrt, Helena Rehulková, Tomás Ozdian, Martin Raus, Vojtech Franc, Josef Chmelí. Identification of N-glycosylation in prolyl endoprotease from Aspergillus niger and evaluation of the enzyme for its possible application in proteomics. Journal of mass spectrometry : JMS. vol 44. issue 11. 2010-03-19. PMID:19757411. |
the enzyme acts upon proline and alanine residues, but there is an additional minor cleavage at some other residues like gly, leu, arg, ser and tyr. |
2010-03-19 |
2023-08-12 |
Not clear |
| Paolo Mereu, Chiara Multineddu, Mara Sannai, Monica Pirastru, Laura Manca, Bruno Masal. Two abnormal fetal hemoglobins found in the Sardinian population: the new Hb F-Osilo [(A)gamma119(GH2)Gly-->Ser, GGC > AGC] and Hb F-Paulinia [(G)gamma80(EF4)Asp-->Tyr, GAT > TAT] already described in the Brazilian population. Hemoglobin. vol 33. issue 6. 2010-03-12. PMID:19958193. |
two abnormal fetal hemoglobins found in the sardinian population: the new hb f-osilo [(a)gamma119(gh2)gly-->ser, ggc > agc] and hb f-paulinia [(g)gamma80(ef4)asp-->tyr, gat > tat] already described in the brazilian population. |
2010-03-12 |
2023-08-12 |
Not clear |
| Amirudeen Nusrath Unissa, Nagamiah Selvakumar, Sameer Hassa. Insight to pyrazinamide resistance in Mycobacterium tuberculosis by molecular docking. Bioinformation. vol 4. issue 1. 2010-03-03. PMID:20011149. |
five mutants were generated with gly at position 8, thr at position 96, arg at position 104, tyr and ser at position 138. |
2010-03-03 |
2023-08-12 |
Not clear |
| Chunxia Zhao, Elena A Matveeva, Qiansheng Ren, Sidney W Whitehear. Dissecting the N-ethylmaleimide-sensitive factor: required elements of the N and D1 domains. The Journal of biological chemistry. vol 285. issue 1. 2010-01-26. PMID:19887446. |
our results show that a positively charged surface on nsf-n, bounded by arg(67) and lys(105), and the conserved residues in the central pore of nsf-d1 (tyr(296) and gly(298)) are involved in snap.snare binding but not basal atp hydrolysis. |
2010-01-26 |
2023-08-12 |
Not clear |
| J W Waggoner, C A Löest, J L Turner, C P Mathis, D M Hallfor. Effects of dietary protein and bacterial lipopolysaccharide infusion on nitrogen metabolism and hormonal responses of growing beef steers. Journal of animal science. vol 87. issue 11. 2010-01-05. PMID:19648488. |
plasma met, thr, leu, ile, phe, trp, gly, ser, asn, and tyr decreased, and plasma ala increased in response to lps (lps x hour; p < 0.01). |
2010-01-05 |
2023-08-12 |
cattle |
| Ahmed I Abouelatta, Ashley A Campanali, Anil R Ekkati, Mark Shamoun, Suneth Kalapugama, Jeremy J Kodank. Oxidation of the natural amino acids by a ferryl complex: kinetic and mechanistic studies with peptide model compounds. Inorganic chemistry. vol 48. issue 16. 2009-12-29. PMID:19594118. |
relative rate constants calculated from these data illustrated the five most reactive substrates; in order of decreasing reactivity were those derived from cys, tyr, trp, met, and gly. |
2009-12-29 |
2023-08-12 |
Not clear |
| Ahmed I Abouelatta, Ashley A Campanali, Anil R Ekkati, Mark Shamoun, Suneth Kalapugama, Jeremy J Kodank. Oxidation of the natural amino acids by a ferryl complex: kinetic and mechanistic studies with peptide model compounds. Inorganic chemistry. vol 48. issue 16. 2009-12-29. PMID:19594118. |
abstraction of alpha-hydrogen atoms from amino acid substrates other than gly and oxidation of side chains contained in the amino acids other than cys, tyr, trp, and met were slow by comparison. |
2009-12-29 |
2023-08-12 |
Not clear |
| Houria Ouled Haddar, Taha I Zaghloul, Hesham M Saee. Biodegradation of native feather keratin by Bacillus subtilis recombinant strains. Biodegradation. vol 20. issue 5. 2009-12-03. PMID:19322665. |
it was found that, the amino acids phe, gly and tyr were the major amino acids liberated in the cultures initiated by both strains. |
2009-12-03 |
2023-08-12 |
chicken |
| Tadanobu Takahashi, Asako Hashimoto, Mami Maruyama, Hideharu Ishida, Makoto Kiso, Yoshihiro Kawaoka, Yasuo Suzuki, Takashi Suzuk. Identification of amino acid residues of influenza A virus H3 HA contributing to the recognition of molecular species of sialic acid. FEBS letters. vol 583. issue 19. 2009-11-13. PMID:19720062. |
the results indicate that the amino acid substitutions thr155 to tyr and glu158 to gly in h3 ha facilitate virus binding to n-glycolylneuraminic acid. |
2009-11-13 |
2023-08-12 |
human |
| Marco Masseroli, Angela Bachi, Egisto Boschetti, Pier Giorgio Righett. Searching for specific motifs in affinity capture in proteome analysis. Journal of proteomics. vol 72. issue 5. 2009-11-04. PMID:19375530. |
in analysing the red blood cell cytoplasmic proteome, in search for low abundance proteins, 15 amino acid (aa; arg, asn, asp, gln, gly, his, ile, lys, phe, pro, ser, thr, trp, tyr, and val) probes, used individually, captured a total of 787 unique gene products. |
2009-11-04 |
2023-08-12 |
Not clear |
| María Fernanda Pomares, Raúl A Salomón, Olga Pavlova, Konstantin Severinov, Ricardo Farías, Paula A Vincen. Potential applicability of chymotrypsin-susceptible microcin J25 derivatives to food preservation. Applied and environmental microbiology. vol 75. issue 17. 2009-10-22. PMID:19592527. |
in the present paper, we describe a chymotrypsin-susceptible mccj25 derivative with a mutation of gly(12) to tyr that retained almost full antibiotic activity and efficiently inhibited the growth of pathogenic salmonella enterica serovar newport and escherichia coli o157:h7 in skim milk and egg yolk. |
2009-10-22 |
2023-08-12 |
Not clear |
| Bin Zhu, Seung-Joo Lee, Charles C Richardso. An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities. The Journal of biological chemistry. vol 284. issue 35. 2009-10-19. PMID:19574219. |
most alterations of residues on the surface of helix e (arg(404), lys(408), tyr(411), and gly(415)) eliminate the ability of the altered proteins to complement growth of t7 phage lacking gene 4. |
2009-10-19 |
2023-08-12 |
Not clear |
| Bin Zhu, Seung-Joo Lee, Charles C Richardso. An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities. The Journal of biological chemistry. vol 284. issue 35. 2009-10-19. PMID:19574219. |
both tyr(411) and gly(415) are important in oligomerization of the protein. |
2009-10-19 |
2023-08-12 |
Not clear |
| Jitendra Vashist, Vishvanath, Renuka Kapoor, Arti Kapil, Ragothaman Yennamalli, N Subbarao, Moganty R Rajeswar. Interaction of nalidixic acid and ciprofloxacin with wild type and mutated quinolone-resistance-determining region of DNA gyrase A. Indian journal of biochemistry & biophysics. vol 46. issue 2. 2009-10-09. PMID:19517991. |
the mutation of ser83 to phe or tyr shows least binding for nalidixic acid, while asp87 to gly or tyr exhibits minimal binding for ciprofloxacin. |
2009-10-09 |
2023-08-12 |
Not clear |
| L Doepel, G E Lobley, J F Bernier, P Dubreuil, H Lapierr. Differences in splanchnic metabolism between late gestation and early lactation dairy cows. Journal of dairy science. vol 92. issue 7. 2009-09-28. PMID:19528600. |
furthermore, net liver removal relative to total liver inflow even decreased for gly, his, met, phe, and tyr. |
2009-09-28 |
2023-08-12 |
Not clear |