| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Gregory P Holland, Janelle E Jenkins, Melinda S Creager, Randolph V Lewis, Jeffery L Yarge. Solid-state NMR investigation of major and minor ampullate spider silk in the native and hydrated states. Biomacromolecules. vol 9. issue 2. 2008-04-14. PMID:18171016. |
this combination of nmr data demonstrates that water plasticizes mi and ma silk similarly, with an increase in chain dynamics observed in regions containing gly, glu, ser, tyr, leu, and a fraction of ala when the mi silk is hydrated. |
2008-04-14 |
2023-08-12 |
spider |
| Marié van der Merwe, Mary-Ann Bjornst. Mutation of Gly721 alters DNA topoisomerase I active site architecture and sensitivity to camptothecin. The Journal of biological chemistry. vol 283. issue 6. 2008-03-31. PMID:18056711. |
crystallographic data reveal that a conserved gly residue (located at the juncture between the linker and c-terminal domains) is at one end of a short alpha-helix, which extends to the active site tyr covalently linked to the dna. |
2008-03-31 |
2023-08-12 |
Not clear |
| b' Am\\xc3\\xa9lie Deglaire, Paul J Moughan, C\\xc3\\xa9cile Bos, Klaus Petzke, Shane M Rutherfurd, Daniel Tom\\xc3\\xa. A casein hydrolysate does not enhance gut endogenous protein flows compared with intact casein when fed to growing rats. The Journal of nutrition. vol 138. issue 3. 2008-03-21. PMID:18287366.' |
ileal eaafl and enfl (id) were not enhanced with diet hc compared with diet c. the aa compositions (g/16 g n) of ileal enfl did not differ between rats fed hc and c except for asp, phe, tyr, and ser, for which contributions were relatively lower (p < 0.05) for rats fed c. ileal eaafl and enfl (hc) were considerably lower (p < 0.05) with id than with uf, but flows of gly, phe, and his were similar. |
2008-03-21 |
2023-08-12 |
rat |
| B P Mukhopadhyay, B Ghosh, H R Bairagya, A K Bera, T K Nandi, S B Da. Modeling study of Rusticyanin-Cytochrome C(4) complex: an insight to possible H-bond mediated recognition and electron--transfer process. Journal of biomolecular structure & dynamics. vol 25. issue 2. 2008-01-28. PMID:17718594. |
several residues gly 82 and 84, his 143 (rcy) were participated through the water mediated (w 389, w 430, w 413, w 431, w 373, and w 478) interaction with the asp 15, ile 82, and 62, tyr 63 (cytc(4)) in dh complex, whereas in eh complex the phe 51, asn 80, tyr 146 (rcy) residues were observed to interact with asn 108, met 120, glu 121 (of cytc(4)) through the water molecules w 507, w 445, w 401, w 446, and w 440. |
2008-01-28 |
2023-08-12 |
Not clear |
| Gregory P Fournier, J Peter Gogarte. Signature of a primitive genetic code in ancient protein lineages. Journal of molecular evolution. vol 65. issue 4. 2008-01-28. PMID:17922074. |
we identify cys, glu, phe, ile, lys, val, trp, and tyr as recent additions to the genetic code, with asn, gln, gly, and leu among the more ancient. |
2008-01-28 |
2023-08-12 |
Not clear |
| Anand Anbarasu, Sudha Anand, Sethumadhavan Ra. Investigations on unconventional hydrogen bonds in RNA binding proteins: the role of CH...O=C interactions. Bio Systems. vol 90. issue 3. 2008-01-22. PMID:17555865. |
the secondary structure preference analysis of ch...o=c interacting residues showed that, arg, gln, glu and tyr preferred to be in helix, while ala, asp, cys, gly, ile, leu, lys, met, phe, trp and val preferred to be in strand conformation. |
2008-01-22 |
2023-08-12 |
Not clear |
| Simiso Dube, Mkhululi T Khumalo, Nelson Torto, Jacob A Nyat. Characterization of amino acids in silk sericin protein from Gonometa rufobrunnae by MEKC with phenyl isothiocyanate derivatization. Journal of separation science. vol 29. issue 9. 2007-12-17. PMID:16833082. |
these included his, tyr, ser, ala, phe, lys, gly, arg, cys, glu, and asp. |
2007-12-17 |
2023-08-12 |
Not clear |
| Sompong Thammasirirak, Sutthidech Preecharram, Pornpimol Ponkham, Sakda Daduang, Tomohiro Araki, Jisnuson Svast. New variant of quail egg white lysozyme identified by peptide mapping. Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. vol 147. issue 2. 2007-12-13. PMID:17331770. |
66, 747-749] and had six amino acid substitutions at position 3 (phe to tyr), 19 (asn to lys), 21 (arg to gln), 102 (gly to val) 103 (asn to his) and 121 (gln to asn) compared to hen egg white lysozyme. |
2007-12-13 |
2023-08-12 |
Not clear |
| Elena Borodina, Tim Nichol, Marc G Dumont, Thomas J Smith, J Colin Murrel. Mutagenesis of the "leucine gate" to explore the basis of catalytic versatility in soluble methane monooxygenase. Applied and environmental microbiology. vol 73. issue 20. 2007-12-06. PMID:17704278. |
all the mutants (with gly, cys, arg, and tyr, respectively, at this position) showed relaxations of regioselectivity compared to the wild type with monoaromatic substrates and biphenyl, including the appearance of new products arising from hydroxylation at the 2- and 3- positions on the benzene ring. |
2007-12-06 |
2023-08-12 |
Not clear |
| Nicole M Very, Mark A Sherida. Somatostatin inhibits insulin-like growth factor-I receptor expression in the gill of a teleost fish (Oncorhynchus mykiss). FEBS letters. vol 581. issue 24. 2007-11-27. PMID:17880945. |
in vitro incubation of gill filaments with ss-14 or various ss isoforms, including ss-28 and [tyr(7), gly(10)]-ss-14-containing peptides, directly inhibited igf-i receptor mrna expression. |
2007-11-27 |
2023-08-12 |
Not clear |
| Hazime Saitô, Yasuharu Kawase, Atushi Kira, Kazutoshi Yamamoto, Michikazu Tanio, Satoru Yamaguchi, Satoru Tuzi, Akira Nait. Surface and dynamic structures of bacteriorhodopsin in a 2D crystal, a distorted or disrupted lattice, as revealed by site-directed solid-state 13C NMR. Photochemistry and photobiology. vol 83. issue 2. 2007-10-19. PMID:17576344. |
almost all of the 13c nmr signals are available from [3-13c]ala or [1-13c]val-labeled br from pm, although the 13c nmr signals from the surface areas, including loops and transmembrane alpha-helices near the surface (8.7 angstroms depth), are suppressed for preparations labeled with [1-13c]gly, ala, leu, phe, tyr, etc. |
2007-10-19 |
2023-08-12 |
Not clear |
| Luis Alberto Ponce-Soto, Paulo Aparecido Baldasso, Frey Francisco Romero-Vargas, Flávia V Winck, José Camillo Novello, Sergio Marangon. Biochemical, pharmacological and structural characterization of two PLA2 isoforms Cdr-12 and Cdr-13 from Crotalus durissus ruruima snake venom. The protein journal. vol 26. issue 1. 2007-10-11. PMID:17203396. |
the amino acid composition showed that both isoforms cdr-12 and cdr-13 have a high content of lys, tyr, gly, arg, and 14 half-cys residues, typical of a basic pla2. |
2007-10-11 |
2023-08-12 |
mouse |
| S B Kim, I S Seo, M A Khan, K S Ki, W S Lee, H J Lee, H S Shin, H S Ki. Enzymatic hydrolysis of heated whey: iron-binding ability of peptides and antigenic protein fractions. Journal of dairy science. vol 90. issue 9. 2007-10-04. PMID:17699019. |
alcalase f-1 had higher ala (18.38%), lys (17.97%), and phe (16.58%) concentrations, whereas the presence of pro, gly, and tyr was not detected. |
2007-10-04 |
2023-08-12 |
Not clear |
| Hanna-Kirsti S Leiros, Angel L Pey, Marte Innselset, Elin Moe, Ingar Leiros, Ida Helene Steen, Aurora Martine. Structure of phenylalanine hydroxylase from Colwellia psychrerythraea 34H, a monomeric cold active enzyme with local flexibility around the active site and high overall stability. The Journal of biological chemistry. vol 282. issue 30. 2007-09-20. PMID:17537732. |
the crystal structure shows regions of local flexibility close to the highly solvent accessible binding sites for bh(4) (gly(87)/phe(88)/gly(89)) and l-phe (tyr(114)-pro(118)). |
2007-09-20 |
2023-08-12 |
Not clear |
| M Meyering-Vos, A Mülle. Structure of the sulfakinin cDNA and gene expression from the Mediterranean field cricket Gryllus bimaculatus. Insect molecular biology. vol 16. issue 4. 2007-09-19. PMID:17488300. |
the peptides include the characteristic amino acid tyr, which is potentially sulphated, and a gly, as a recognition site for amidation yeilding the common c-terminal amino acid sequence of the sulfakinin peptide family. |
2007-09-19 |
2023-08-12 |
cricket |
| Daisuke Irikura, Takashi Inui, Carsten T Beuckmann, Kousuke Aritake, Gerhard Schreiber, Masashi Miyano, Tsuyoshi Inoue, Yoshihiro Urad. Characterization of a major secretory protein in the cane toad (Bufo marinus) choroid plexus as an amphibian lipocalin-type prostaglandin D synthase. Journal of biochemistry. vol 141. issue 2. 2007-09-17. PMID:17167040. |
the quadruple gly(39)ser/ala(75)ser/ser(140)thr/phe(142)tyr mutant of the toad protein, resembling mouse l-pgds, showed a 1.6 fold increase in the turnover number and a shift in the optimum ph for the pgds activity from 9.0 to 8.5. |
2007-09-17 |
2023-08-12 |
mouse |
| Anand Anbarasu, Sudha Anand, M Madan Babu, Rao Sethumadhava. Investigations on C-H...pi interactions in RNA binding proteins. International journal of biological macromolecules. vol 41. issue 3. 2007-09-06. PMID:17420044. |
the donor atom contribution to c-hcdots, three dots, centeredpi interactions was mainly from phe, tyr, trp, pro, gly, lys, his and ala residues. |
2007-09-06 |
2023-08-12 |
Not clear |
| Anand Anbarasu, Sudha Anand, M Madan Babu, Rao Sethumadhava. Investigations on C-H...pi interactions in RNA binding proteins. International journal of biological macromolecules. vol 41. issue 3. 2007-09-06. PMID:17420044. |
the secondary structure preference analysis of c-hcdots, three dots, centeredpi interacting residues showed that, arg, gln, glu, his, ile, leu, lys, met, phe and tyr preferred to be in helix, while ala, asp, cys, gly, trp and val preferred to be in strand conformation. |
2007-09-06 |
2023-08-12 |
Not clear |
| Amy E Hilderbrand, David E Clemme. Determination of sequence-specific intrinsic size parameters from cross sections for 162 tripeptides. The journal of physical chemistry. B. vol 109. issue 23. 2007-08-06. PMID:16852449. |
the isomers have the general forms abc, acb, bac, bca, cab, and cba, where a corresponds to the amino acids asp, glu, or gly, b corresponds to lys, arg, or leu, and c corresponds to phe, tyr, or ser. |
2007-08-06 |
2023-08-12 |
Not clear |
| Patrick C A van der Wel, Józef R Lewandowski, Robert G Griffi. Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p. Journal of the American Chemical Society. vol 129. issue 16. 2007-07-09. PMID:17397156. |
sup35p is a prion protein found in yeast that contains a prion-forming domain characterized by a repetitive sequence rich in gln, asn, tyr, and gly amino acid residues. |
2007-07-09 |
2023-08-12 |
Not clear |