| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Sunil K Panigrahi, Gautam R Desiraj. Strong and weak hydrogen bonds in the protein-ligand interface. Proteins. vol 67. issue 1. 2007-05-11. PMID:17206656. |
interactions involving water as donor or acceptor, and c--h...o bonds with gly and tyr as donors are ubiquitous in the active site. |
2007-05-11 |
2023-08-12 |
Not clear |
| Yen-Peng Ho, Ming-Wei Yang, Li-Ting Chen, Yu-Chuan Yan. Relative calcium-binding strengths of amino acids determined using the kinetic method. Rapid communications in mass spectrometry : RCM. vol 21. issue 6. 2007-05-09. PMID:17315289. |
the relative ca(2+)-binding strengths of the alpha-amino acid complexes follow the order cys < ser < thr < ile < leu < val < gly < ala < pro < phe < met < tyr < asn < his < gln < trp < lys < arg. |
2007-05-09 |
2023-08-12 |
Not clear |
| V L Bonfim, L A Ponce-Soto, J C Novello, S Marangon. Structural and functional properties of Cr 5, a new Lys49 phospholipase A2 homologue isolated from the venom of the snake Calloselasma rhodostoma. The protein journal. vol 25. issue 7-8. 2007-04-23. PMID:17123155. |
the amino acid composition showed that cr 5 had a high content of lys, tyr, gly, pro, and 14 half-cys residues, typical residues of a basic pla(2). |
2007-04-23 |
2023-08-12 |
mouse |
| Guozhong Xu, Mark R Chanc. Radiolytic modification and reactivity of amino acid residues serving as structural probes for protein footprinting. Analytical chemistry. vol 77. issue 14. 2007-04-19. PMID:16013872. |
a reactivity order of amino acid side chains was obtained as cys > met > trp > tyr > phe > cystine > his > leu, ile > arg, lys, val > ser, thr, pro > gln, glu > asp, asn > ala > gly. |
2007-04-19 |
2023-08-12 |
Not clear |
| Luis Alberto Ponce-Soto, Bruno Lomonte, José María Gutiérrez, Lea Rodrigues-Simioni, José Camillo Novello, Sergio Marangon. Structural and functional properties of BaTX, a new Lys49 phospholipase A2 homologue isolated from the venom of the snake Bothrops alternatus. Biochimica et biophysica acta. vol 1770. issue 4. 2007-04-17. PMID:17270350. |
the amino acid composition showed that batx has a high content of lys, tyr, gly, pro, and 14 half-cys residues, typical of a basic pla(2). |
2007-04-17 |
2023-08-12 |
mouse |
| Min-Duk Seo, Sung Jean Park, Hyun-Jung Kim, Bong Jin Le. Identification of the WW domain-interaction sites in the unstructured N-terminal domain of EBV LMP 2A. FEBS letters. vol 581. issue 1. 2007-02-27. PMID:17174309. |
the binding of the ww3 peptide caused the resonances of five residues (tyr(60), glu(61), asp(62), trp(65), and gly(66)) just behind the n-terminal py motif of the lmp2a ntd to disappear. |
2007-02-27 |
2023-08-12 |
Not clear |
| Alexandra Raybaud, Yolaine Dodier, Pierre Bissonnette, Manuel Simoes, Daniel G Bichet, Rémy Sauvé, Lucie Paren. The role of the GX9GX3G motif in the gating of high voltage-activated Ca2+ channels. The Journal of biological chemistry. vol 281. issue 51. 2007-02-06. PMID:17038321. |
macroscopic inactivation kinetics were markedly reduced by mutations of gly(436) to ala, pro, tyr, glu, arg, his, lys, or asp residues with stronger effects obtained with charged and polar residues. |
2007-02-06 |
2023-08-12 |
human |
| F Guay, N L Trottie. Muscle growth and plasma concentrations of amino acids, insulin-like growth factor-I, and insulin in growing pigs fed reduced-protein diets. Journal of animal science. vol 84. issue 11. 2006-12-18. PMID:17032795. |
the reduction in the dietary cp concentration increased prefeeding plasma concentrations of ala, gln, gly, and total aa but decreased arg, asn, his, ile, phe, trp, and tyr (linear, p < 0.05). |
2006-12-18 |
2023-08-12 |
Not clear |
| F Guay, N L Trottie. Muscle growth and plasma concentrations of amino acids, insulin-like growth factor-I, and insulin in growing pigs fed reduced-protein diets. Journal of animal science. vol 84. issue 11. 2006-12-18. PMID:17032795. |
the reduction in the dietary cp concentration increased postfeeding plasma concentrations of ala, lys, met (linear, p < 0.01), and gly (linear, p = 0.073) and decreased asn, ser, tyr, arg, his, and leu (linear, p < 0.05). |
2006-12-18 |
2023-08-12 |
Not clear |
| Zonghe Yan, Zhaodong Liang, Tomas Obsil, Stanko S Stojilkovi. Participation of the Lys313-Ile333 sequence of the purinergic P2X4 receptor in agonist binding and transduction of signals to the channel gate. The Journal of biological chemistry. vol 281. issue 43. 2006-12-07. PMID:16954225. |
to study the roles of the lys(313)-ile(333) ectodomain sequence of the rat p2x(4) receptor in atp binding and transduction of signals to the channel gate, the conserved lys(313), tyr(315), gly(316), ike(317), arg(318), asp(320), val(323), lys(329), phe(330), and ile(333) residues were mutated. |
2006-12-07 |
2023-08-12 |
rat |
| Kazuki Nakashima, Aiko Ishida, Yoko Yakabe, Makoto Yamazaki, Hiroyuki Ab. Effects of orally administrated amino acids on myofibrillar proteolysis in chicks. Bioscience, biotechnology, and biochemistry. vol 70. issue 8. 2006-11-14. PMID:16926512. |
plasma n(tau)-methylhistidine concentration, as an index of myofibrillar proteolysis, was decreased by the administration of glu, gly, ala, leu, ile, ser, thr, met, trp, asn, gln, pro, lys and arg but not by asp, val, phe, tyr or his to chicks. |
2006-11-14 |
2023-08-12 |
Not clear |
| F Guay, S M Donovan, N L Trottie. Biochemical and morphological developments are partially impaired in intestinal mucosa from growing pigs fed reduced-protein diets supplemented with crystalline amino acids. Journal of animal science. vol 84. issue 7. 2006-10-19. PMID:16775059. |
in the ileum, reducing cp decreased free asn, ser, tyr, arg, his, phe (linear, p < 0.05), and leu (linear, p = 0.054) and peptide-bound gly and ser (linear, p < 0.05) and tended to decrease peptide-bound ile, leu, phe, val (linear, p < 0.10), and lys (linear p < 0.05). |
2006-10-19 |
2023-08-12 |
Not clear |
| Sanjika Dias-Gunasekara, Marcel van Lith, J A Gareth Williams, Ritu Kataky, Adam M Benha. Mutations in the FAD binding domain cause stress-induced misoxidation of the endoplasmic reticulum oxidoreductase Ero1beta. The Journal of biological chemistry. vol 281. issue 35. 2006-10-10. PMID:16822866. |
here, we show that these gly to ser and his to tyr mutations do not prevent the dimerization of ero1beta or the non-covalent interaction of ero1beta with pdi. |
2006-10-10 |
2023-08-12 |
Not clear |
| Sanjika Dias-Gunasekara, Marcel van Lith, J A Gareth Williams, Ritu Kataky, Adam M Benha. Mutations in the FAD binding domain cause stress-induced misoxidation of the endoplasmic reticulum oxidoreductase Ero1beta. The Journal of biological chemistry. vol 281. issue 35. 2006-10-10. PMID:16822866. |
both the gly to ser and his to tyr mutations make ero1beta susceptible to misoxidation and aggregation, particularly during a temperature or redox stress. |
2006-10-10 |
2023-08-12 |
Not clear |
| Hikaru Suenaga, Masatoshi Goto, Kensuke Furukaw. Active-site engineering of biphenyl dioxygenase: effect of substituted amino acids on substrate specificity and regiospecificity. Applied microbiology and biotechnology. vol 71. issue 2. 2006-09-12. PMID:16217654. |
in this study, we replaced thr-376 with gly, ser, gln, tyr, val, phe, asp, and lys and expressed these enzymes in escherichia coli. |
2006-09-12 |
2023-08-12 |
Not clear |
| Edit Szepessy, Miklós Sahin-Tót. Human mesotrypsin exhibits restricted S1' subsite specificity with a strong preference for small polar side chains. The FEBS journal. vol 273. issue 13. 2006-08-16. PMID:16759229. |
compared with thr or ser, p1' gly or met inhibited cleavage 13- and 25-fold, respectively, whereas p1' asn, asp, ile, phe or tyr resulted in 100-200-fold diminished rates of proteolysis, and pro abolished cleavage completely. |
2006-08-16 |
2023-08-12 |
human |
| T V Gogitidze, V P Demushkin, E V Zhavoronkova, V V Kopytov, N S Marchenko. [Conformational analysis of cysteine-containing peptides and prospects of their application to 213Bi chelating in antitumor therapy]. Bioorganicheskaia khimiia. vol 32. issue 3. 2006-08-16. PMID:16808169. |
among the analogues of peptide fragments of the metallothioneins, lacking in natural peptides, low-energy pentapeptide ccxxc fragments (where x = gln, asn, phe, tyr, and gly) were revealed. |
2006-08-16 |
2023-08-12 |
Not clear |
| Young J Lee, Ki S Kim, Jae H Kim, Ryun B Ta. Salmonella gallinarum gyrA mutations associated with fluoroquinolone resistance. Avian pathology : journal of the W.V.P.A. vol 33. issue 2. 2006-07-07. PMID:15276996. |
these mutants contained a change from ser to phe or tyr at codon 83, or a change from asp to gly, tyr or asn at codon 87, and showed a range of minimum inhibitory concentrations of enrofloxacin from 0.5 to 8 microg/ml, ciprofloxacin from 0.25 to 4 microg/ml, norfloxacin from 2 to 32 microg/ml, ofloxacin from 0.5 to 4 microg/ml, and danofloxacin from 0.5 to 4 microg/ml. |
2006-07-07 |
2023-08-12 |
Not clear |
| Hua Zhao, Nicholas B Robertson, Scott A Jewhurst, J Herbert Wait. Probing the adhesive footprints of Mytilus californianus byssus. The Journal of biological chemistry. vol 281. issue 16. 2006-06-13. PMID:16495227. |
both are rich in gly and asn and exhibit post-translational hydroxylation of tyr and arg to dopa and 4-hydroxyarginine, respectively, with the fast variant containing more than twice as much lys + arg. |
2006-06-13 |
2023-08-12 |
Not clear |
| Ilaria Bonaduce, Maria Perla Colombini, Stéphane Dirin. Identification of garlic in old gildings by gas chromatography-mass spectrometry. Journal of chromatography. A. vol 1107. issue 1-2. 2006-05-26. PMID:16413559. |
the average amino acidic composition was: glutamic acid (glu; 29%), aspartic acid (asp; 17%), serine (ser; 11%), alanine, glycine, valine, leucine, lysine and phenylalanine (ala, gly, val, leu, lys and phe; 5-6%), isoleucine, proline and tyrosine (ile, pro and tyr; 2-3%), methionine and hydroxyproline (met and hyp; 0.5%). |
2006-05-26 |
2023-08-12 |
Not clear |