| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Agnes Czikora, Daniel J Lundberg, Adelle Abramovitz, Nancy E Lewin, Noemi Kedei, Megan L Peach, Xiaoling Zhou, Raymond C Merritt, Elizabeth A Craft, Derek C Braun, Peter M Blumber. Structural Basis for the Failure of the C1 Domain of Ras Guanine Nucleotide Releasing Protein 2 (RasGRP2) to Bind Phorbol Ester with High Affinity. The Journal of biological chemistry. vol 291. issue 21. 2016-12-13. PMID:27022025. |
replacing asn(7), ser(8), ala(19), and ile(21) with the corresponding residues from rasgrp1/3 (thr(7), tyr(8), gly(19), and leu(21), respectively) conferred potent binding affinity (kd = 1.47 ± 0.03 nm) in vitro and membrane translocation in response to phorbol 12-myristate 13-acetate in lncap cells. |
2016-12-13 |
2023-08-13 |
Not clear |
| Ladawan Nakchum, Sang Moo Ki. Preparation of squid skin collagen hydrolysate as an antihyaluronidase, antityrosinase, and antioxidant agent. Preparative biochemistry & biotechnology. vol 46. issue 2. 2016-10-05. PMID:25568978. |
gly, val, and pro were major amino acids in f3, while met, tyr, and his were minor ones. |
2016-10-05 |
2023-08-13 |
squid |
| Golnaz Bahramali, Bahram Goliaei, Zarrin Minuchehr, Ali Salar. Chameleon sequences in neurodegenerative diseases. Biochemical and biophysical research communications. vol 472. issue 1. 2016-08-08. PMID:26920059. |
our data revealed that gly, val, ile, tyr and phe, are the major amino acids in chameleons. |
2016-08-08 |
2023-08-13 |
Not clear |
| Rieko Okame, Keiko Nakahara, Noboru Murakam. Plasma amino acid profiles at various reproductive stages in female rats. The Journal of veterinary medical science. vol 77. issue 7. 2016-06-03. PMID:25787929. |
the plasma ser level decreased significantly in mid and late pregnancy, whereas tyr, gly and his decreased significantly in the late and end stages of pregnancy, and trp and lys significantly decreased and increased at the end of pregnancy, respectively. |
2016-06-03 |
2023-08-13 |
rat |
| Wei Zheng, Jishou Ruan, Gang Hu, Kui Wang, Michelle Hanlon, Jianzhao Ga. Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull. PloS one. vol 10. issue 8. 2016-05-04. PMID:26244562. |
we found that conformational b-cell epitopes are rich in charged residues asp, glu, lys, arg, his; aliphatic residues gly, pro; non-charged residues asn, gln; and aromatic residue tyr. |
2016-05-04 |
2023-08-13 |
Not clear |
| Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoi. Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement. Cell. vol 161. issue 4. 2016-04-28. PMID:25957686. |
we identify a novel class of trfs derived from trna(glu), trna(asp), trna(gly), and trna(tyr) that, upon induction, suppress the stability of multiple oncogenic transcripts in breast cancer cells by displacing their 3' untranslated regions (utrs) from the rna-binding protein ybx1. |
2016-04-28 |
2023-08-13 |
Not clear |
| Chompoonuch Wiriyaphan, Benjamart Chitsomboon, Jirawat Yongsawadigu. Antioxidant activity of protein hydrolysates derived from threadfin bream surimi byproducts. Food chemistry. vol 132. issue 1. 2016-04-12. PMID:26434269. |
fbs and rd were rich in lys, glu, gly, pro, asp, leu, his, tyr and phe. |
2016-04-12 |
2023-08-13 |
Not clear |
| Olivier Bignucolo, Hoi Tik Alvin Leung, Stephan Grzesiek, Simon Bernèch. Backbone hydration determines the folding signature of amino acid residues. Journal of the American Chemical Society. vol 137. issue 13. 2016-03-17. PMID:25794270. |
to better understand the underlying mechanism, we studied peptides of the sequence egaaxaass (x = gly, ile, tyr, trp) through comparison of molecular dynamics (md) trajectories and nmr residual dipolar coupling (rdc) measurements. |
2016-03-17 |
2023-08-13 |
Not clear |
| C Shi, J He, J Yu, B Yu, X Mao, P Zheng, Z Huang, D Che. Amino acid, phosphorus, and energy digestibility of Aspergillus niger fermented rapeseed meal fed to growing pigs. Journal of animal science. vol 93. issue 6. 2016-03-09. PMID:26115278. |
however, the aid of 2 indispensable aa (lys and met) and 3 dispensable aa (asp, gly, and tyr) were greater (p < 0.05) for frsm than for rsm. |
2016-03-09 |
2023-08-13 |
Not clear |
| C Shi, J He, J Yu, B Yu, X Mao, P Zheng, Z Huang, D Che. Amino acid, phosphorus, and energy digestibility of Aspergillus niger fermented rapeseed meal fed to growing pigs. Journal of animal science. vol 93. issue 6. 2016-03-09. PMID:26115278. |
the sid of only 2 dispensable aa (gly and tyr) were greater (p < 0.05) for frsm than for rsm. |
2016-03-09 |
2023-08-13 |
Not clear |
| b' Sonja Mili\\xc4\\x87, Jelena Bogdanovi\\xc4\\x87 Pristov, Dragosav Mutavd\\xc5\\xbei\\xc4\\x87, Aleksandar Savi\\xc4\\x87, Mihajlo Spasi\\xc4\\x87, Ivan Spasojevi\\xc4\\x8. The relationship of physicochemical properties to the antioxidative activity of free amino acids in Fenton system. Environmental science & technology. vol 49. issue 7. 2016-01-04. PMID:25764263.' |
the rank order according to aa was: trp > norleucine > phe, leu > ile > his >3,4-dihydroxyphenylalanine, arg > val > lys, tyr, pro > hydroxyproline > α-aminobutyric acid > gln, thr, ser > glu, ala, gly, asn, asp. |
2016-01-04 |
2023-08-13 |
Not clear |
| Adrià Gil, Sílvia Simon, Luis Rodríguez-Santiago, Juan Bertrán, Mariona Sodup. Influence of the Side Chain in the Structure and Fragmentation of Amino Acids Radical Cations. Journal of chemical theory and computation. vol 3. issue 6. 2015-12-07. PMID:26636213. |
the conformational properties of ionized amino acids (gly, ala, ser, cys, asp, gln, phe, tyr, and his) have been theoretically analyzed using the hybrid b3lyp and the hybrid-meta mpwb1k functionals as well as with the post-hartree fock ccsd(t) level of theory. |
2015-12-07 |
2023-08-13 |
Not clear |
| Yan Wang, Yan Ma, Xiaoting Xu, Shuang Hao, Yue Han, Wenqing Yao, Zhuo Zha. [Genetic Characterization of Hemagglutinin on Measles Virus Epidemic Strain Genotype H1a in Liaoning Province (China) from 1997 to 2014]. Bing du xue bao = Chinese journal of virology. vol 31. issue 4. 2015-11-30. PMID:26524914. |
all 63 strains of the measles virus were mutated from: serine (ser s) to asparagine (asn n) in the 240th amino acid; arginine (arg r) to glycine (gly g) in the 243th; and tyrosine (tyr y) to asn n in the 481th amino acid. |
2015-11-30 |
2023-08-13 |
Not clear |
| Guilherme Volpe Bossa, Alfred Fahr, Tereza Pereira de Souz. Study of pK values and effective dielectric constants of ionizable residues in pentapeptides and in staphylococcal nuclease (SNase) using a mean-field approach. The journal of physical chemistry. B. vol 118. issue 15. 2015-11-16. PMID:24708515. |
the proposed model was applied to the amino acids asp, glu, lys, his, tyr, and cys, and since the results were consistent with experimentally obtained values, the model was extended and applied to computation of pk values of gly and ala pentapeptides and of ionizable residues of the enzyme staphylococcal nuclease (snase). |
2015-11-16 |
2023-08-13 |
Not clear |
| Yin-Shiou Lin, Wen-Chung Wu, Shyr-Yi Lin, Wen-Chi Ho. Glycine hydroxamate inhibits tyrosinase activity and melanin contents through downregulating cAMP/PKA signaling pathways. Amino acids. vol 47. issue 3. 2015-10-26. PMID:25501504. |
among the eight amino acid hydroxamates tested, glycine hydroxamate (gh) was the best inhibitor of mushroom tyrosinase (tyr). |
2015-10-26 |
2023-08-13 |
Not clear |
| Yukinori Okada, Kwangwoo Kim, Buhm Han, Nisha E Pillai, Rick T-H Ong, Woei-Yuh Saw, Ma Luo, Lei Jiang, Jian Yin, So-Young Bang, Hye-Soon Lee, Matthew A Brown, Sang-Cheol Bae, Huji Xu, Yik-Ying Teo, Paul I W de Bakker, Soumya Raychaudhur. Risk for ACPA-positive rheumatoid arthritis is driven by shared HLA amino acid polymorphisms in Asian and European populations. Human molecular genetics. vol 23. issue 25. 2015-07-13. PMID:25070946. |
the individual residues at position 13 have relative effects that are consistent with published effects in european populations (his > phe > arg > tyr ≅ gly > ser)--but the observed effects in asians are generally smaller. |
2015-07-13 |
2023-08-13 |
human |
| Vishnu Menon, Mala Ra. Interactions of a low molecular weight inhibitor from Streptomyces sp. MBR04 with human cathepsin D: implications in mechanism of inactivation. Applied biochemistry and biotechnology. vol 174. issue 5. 2015-06-23. PMID:25141983. |
the mr of the inhibitor was 1,078 da as determined by maldi-tof, and the amino acid analysis showed the presence of asp, asp, gly, ala, lys, leu, tyr, trp residues. |
2015-06-23 |
2023-08-13 |
human |
| Kevin T Militello, Leanne M Chen, Sarah E Ackerman, Alexandra H Mandarano, Erika L Valentin. A map of 5-methylcytosine residues in Trypanosoma brucei tRNA revealed by sodium bisulfite sequencing. Molecular and biochemical parasitology. vol 193. issue 2. 2015-05-12. PMID:24389163. |
therefore, we determined if t. brucei trna(asp(guc)), trna(gly(gcc)), trna(val(aac)), and trna(tyr(gua)) contain 5-methylcytosines via rna bisulfite sequencing. |
2015-05-12 |
2023-08-12 |
Not clear |
| Sreekumar Kodangattil, Christine Huard, Cindy Ross, Jian Li, Huilan Gao, Alessandro Mascioni, Santosh Hodawadekar, Snehal Naik, Jessica Min-debartolo, Alberto Visintin, Juan C Almagr. The functional repertoire of rabbit antibodies and antibody discovery via next-generation sequencing. mAbs. vol 6. issue 3. 2015-05-12. PMID:24481222. |
the amino acid composition of the predominant cdr-h3 and -l3 loop lengths was similar to that of humans and mice, rich in tyr, gly, ser and, in some specific positions, asp. |
2015-05-12 |
2023-08-12 |
mouse |
| Jörg Willenborg, Claudia Huber, Anna Koczula, Birgit Lange, Wolfgang Eisenreich, Peter Valentin-Weigand, Ralph Goeth. Characterization of the pivotal carbon metabolism of Streptococcus suis serotype 2 under ex vivo and chemically defined in vitro conditions by isotopologue profiling. The Journal of biological chemistry. vol 290. issue 9. 2015-05-11. PMID:25575595. |
de novo biosynthesis was shown for ala, asp, ser, and thr at high rates and for gly, lys, phe, tyr, and val at moderate or low rates, respectively. |
2015-05-11 |
2023-08-13 |
Not clear |