| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| John David Pilapil, Kin Israel Notarte, King Lun Yeun. The dominance of co-circulating SARS-CoV-2 variants in wastewater. International journal of hygiene and environmental health. vol 253. 2023-07-31. PMID:37523818. |
the dominance of co-circulating variants was observed, namely b.1 in 2020, alpha and delta in 2021, then superseded by omicron lineages in 2022 with a three-times increase. |
2023-07-31 |
2023-08-14 |
Not clear |
| Andrei Feldiorean, James Bena, Megan O Nakashima, Adam J McShane, Claudiu V Cott. Formalin-Fixation Followed by Paraffin-Embedding Allows Long-Term Storage of Proteins for Liquid Chromatography Tandem Mass Spectrometry Analysis. Laboratory investigation; a journal of technical methods and pathology. 2023-07-30. PMID:37517701. |
peptide-spectrum match (psm), number of peptides identified, and percentage of the proteins covered were the parameters collected for the hemoglobin subunits alpha (hba), beta (hbb), delta (hbd), and gamma (hbg). |
2023-07-30 |
2023-08-14 |
Not clear |
| Muhammad Waqar Aziz, Nadia Mukhtar, Aftab Ahamd Anjum, Muhammad Hassan Mushtaq, Muhammad Adnan Ashraf, Amar Nasir, Muhammad Furqan Shahid, Muhammad Nawaz, Muhammad Zubair Shabbir, Noreen Sarwar, Rabia Tanvir, Tahir Yaqu. Genomic Diversity and Evolution of SARS-CoV-2 Lineages in Pakistan. Viruses. vol 15. issue 7. 2023-07-29. PMID:37515139. |
the most dominant variants in pakistan were alpha (b.1.1.7), beta (b.1.351), delta (b.1.617.2, ay.108), and omicron (ba.2.75, ba.5.2), and the n-terminal domain and receptor binding regions were the most hypervariable regions of the spike gene. |
2023-07-29 |
2023-08-14 |
Not clear |
| Pablo N Perez-Guzman, Edward Knock, Natsuko Imai, Thomas Rawson, Yasin Elmaci, Joana Alcada, Lilith K Whittles, Divya Thekke Kanapram, Raphael Sonabend, Katy A M Gaythorpe, Wes Hinsley, Richard G FitzJohn, Erik Volz, Robert Verity, Neil M Ferguson, Anne Cori, Marc Bagueli. Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England. Nature communications. vol 14. issue 1. 2023-07-17. PMID:37460537. |
furthermore, in contrast to previous studies, we found alpha had the highest basic infection fatality ratio (2.9%, 95% cri 2.7-3.2), followed by delta (2.2%, 95% cri 2.0-2.4), wildtype (1.2%, 95% cri 1.1-1.2), and omicron (0.7%, 95% cri 0.6-0.8). |
2023-07-17 |
2023-08-14 |
Not clear |
| Vasiliki Epameinondas Georgakopoulou, Aikaterini Gkoufa, Anastasia Bougea, Dimitrios Basoulis, Aristeidis Tsakanikas, Sotiria Makrodimitri, Georgios Karamanakos, Demetrios A Spandidos, Efthalia Angelopoulou, Nikolaos V Sipsa. Characteristics and outcomes of elderly patients with Parkinson's disease hospitalized due to COVID‑19‑associated pneumonia. Medicine international. vol 3. issue 4. 2023-07-14. PMID:37448768. |
in total, 8 patients (22.2%) were hospitalized during the period of alpha variant predominance, 3 patients (8.3%) during the period of delta variant predominance, and 25 patients (69.4%) during the omicron variant predominance period. |
2023-07-14 |
2023-08-14 |
Not clear |
| Tingfu Du, Chunchun Gao, Shuaiyao Lu, Qianlan Liu, Yun Yang, Wenhai Yu, Wenjie Li, Yong Qiao Sun, Cong Tang, Junbin Wang, Jiahong Gao, Yong Zhang, Fangyu Luo, Ying Yang, Yun-Gui Yang, Xiaozhong Pen. Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques. Genomics, proteomics & bioinformatics. 2023-07-14. PMID:37451436. |
intriguingly, the original sars-cov-2 strain and alpha strain induced larger alteration of rna abundance in tissues of rhesus monkeys than beta and delta variants did. |
2023-07-14 |
2023-08-14 |
monkey |
| Ming-Xiong Huang, Deborah L Harrington, Annemarie Angeles-Quinto, Zhengwei Ji, Ashley Robb-Swan, Charles W Huang, Qian Shen, Hayden Hansen, Jared Baumgartner, Jaqueline Hernandez-Lucas, Sharon Nichols, Joanna Jacobus, Tao Song, Imanuel Lerman, Maksim Bazhenov, Giri P Krishnan, Dewleen G Baker, Ramesh Rao, Roland R Le. EMG-projected MEG High-Resolution Source Imaging of Human Motor Execution: Brain-Muscle Coupling above Movement Frequencies. medRxiv : the preprint server for health sciences. 2023-07-10. PMID:37425691. |
we studied delta (1-4 hz), theta (4-7 hz), alpha (8-12 hz), beta (15-30 hz), and gamma (30-90 hz) bands in 13 healthy participants (26 datasets) and two presurgical patients with sensorimotor dysfunction. |
2023-07-10 |
2023-08-14 |
human |
| Ming-Xiong Huang, Deborah L Harrington, Annemarie Angeles-Quinto, Zhengwei Ji, Ashley Robb-Swan, Charles W Huang, Qian Shen, Hayden Hansen, Jared Baumgartner, Jaqueline Hernandez-Lucas, Sharon Nichols, Joanna Jacobus, Tao Song, Imanuel Lerman, Maksim Bazhenov, Giri P Krishnan, Dewleen G Baker, Ramesh Rao, Roland R Le. EMG-projected MEG High-Resolution Source Imaging of Human Motor Execution: Brain-Muscle Coupling above Movement Frequencies. medRxiv : the preprint server for health sciences. 2023-07-10. PMID:37425691. |
in healthy participants, emg-projected meg accurately localized m1 with high accuracy in delta (100.0%), theta (100.0%), and beta (76.9%) bands, but not alpha (34.6%) and gamma (0.0%) bands. |
2023-07-10 |
2023-08-14 |
human |
| Juan García-Bernalt Diego, Gagandeep Singh, Sonia Jangra, Kim Handrejk, Manon Laporte, Lauren A Chang, Sara S El Zahed, Lars Pache, Max W Chang, Prajakta Warang, Sadaf Aslam, Ignacio Mena, Brett T Webb, Christopher Benner, Adolfo García-Sastre, Michael Schotsaer. Breakthrough infections by SARS-CoV-2 variants boost cross-reactive hybrid immune responses in mRNA-vaccinated Golden Syrian Hamsters. bioRxiv : the preprint server for biology. 2023-07-10. PMID:37425792. |
vaccination reduced morbidity and controlled lung virus titers for ancestral virus and alpha but allowed breakthrough infections in beta, delta and mu-challenged hamsters. |
2023-07-10 |
2023-08-14 |
Not clear |
| Tzu Chun Wang, Wei Yi Li, Jerry Cheng-Yen Lai, Terry B J Kuo, Cheryl C H Yan. Nociception Effect on Frontal Electroencephalogram Waveform and Phase-Amplitude Coupling in Laparoscopic Surgery. Anesthesia and analgesia. 2023-07-10. PMID:37428681. |
alpha dropout, delta arousal, and beta arousal with noxious stimulation have been described during anesthesia; however, data on the reaction of other electroencephalogram signatures toward nociception are scarce. |
2023-07-10 |
2023-08-14 |
Not clear |
| Suad Hannawi, Linda Saifeldin, Alaa Abuquta, Ahmad Alamadi, Sally A Mahmoud, Aala Hassan, Shuping Xu, Jian Li, Dongfang Liu, Adam Abdul Hakeem Baidoo, Dima Ibrahim, Mojtaba Alhaj, Yuanxin Chen, Qiang Zhou, Liangzhi Xi. Safety and immunogenicity of a tetravalent and bivalent SARS-CoV-2 protein booster vaccine in men. Nature communications. vol 14. issue 1. 2023-07-08. PMID:37422518. |
the safety and immunogenicity of a protein-based tetravalent vaccine sctv01e that contains spike protein ectodomain (s-ecd) of alpha, beta, delta and omicron ba.1 are assessed and compared with bivalent protein vaccine sctv01c (alpha and beta variants) and monovalent mrna vaccine (nct05323461). |
2023-07-08 |
2023-08-14 |
human |
| László Gopcsa, Marienn Réti, Hajnalka Andrikovics, Ilona Bobek, Gabriella Bekő, Judit Bogyó, Andrea Ceglédi, Katalin Dobos, Laura Giba-Kiss, István Jankovics, Orsolya Kis, Botond Lakatos, Dóra Mathiász, Nóra Meggyesi, Gottfried Miskolczi, Noémi Németh, Melinda Paksi, Alexandra Riczu, János Sinkó, Bálint Szabó, Anikó Szilvási, János Szlávik, Szabolcs Tasnády, Péter Reményi, István Vályi-Nag. Effective virus-specific T-cell therapy for high-risk SARS-CoV-2 infections in hematopoietic stem cell transplant recipients: initial case studies and literature review. GeroScience. 2023-07-06. PMID:37414968. |
this paper details the successful application of sars-cov-2-specific memory t-cell therapy, produced by an interferon-γ cytokine capture system (clinimacs® prodigy device), in three stem cell transplant recipients diagnosed with covid-19 (case 1: alpha variant, cases 2 and 3: delta variants). |
2023-07-06 |
2023-08-14 |
Not clear |
| Martina Kopčanová, Luke Tait, Thomas Donoghue, George Stothart, Laura Smith, Aimee Arely Flores Sandoval, Paula Davila-Perez, Stephanie Buss, Mouhsin M Shafi, Alvaro Pascual-Leone, Peter J Fried, Christopher S Y Benwel. Resting-state EEG signatures of Alzheimer's disease are driven by periodic but not aperiodic changes. bioRxiv : the preprint server for biology. 2023-07-03. PMID:37398162. |
a large body of evidence shows that, compared to healthy controls (hc), ad is associated with power increases in lower eeg frequencies (delta and theta) and decreases in higher frequencies (alpha and beta), together with slowing of the peak alpha frequency. |
2023-07-03 |
2023-08-14 |
Not clear |
| Martina Kopčanová, Luke Tait, Thomas Donoghue, George Stothart, Laura Smith, Aimee Arely Flores Sandoval, Paula Davila-Perez, Stephanie Buss, Mouhsin M Shafi, Alvaro Pascual-Leone, Peter J Fried, Christopher S Y Benwel. Resting-state EEG signatures of Alzheimer's disease are driven by periodic but not aperiodic changes. bioRxiv : the preprint server for biology. 2023-07-03. PMID:37398162. |
we found strong evidence that the alterations are purely periodic in nature, with decreases in oscillatory power at alpha and beta frequencies (ad < hc) leading to lower (alpha + beta) / (delta + theta) power ratios in ad. |
2023-07-03 |
2023-08-14 |
Not clear |
| Sangeeta Bhatia, Jack Wardle, Rebecca K Nash, Pierre Nouvellet, Anne Cor. Extending EpiEstim to estimate the transmission advantage of pathogen variants in real-time: SARS-CoV-2 as a case-study. Epidemics. vol 44. 2023-07-03. PMID:37399634. |
we further estimate that delta is 1.77 (95% cri 1.69-1.85) times more transmissible than alpha (england data). |
2023-07-03 |
2023-08-14 |
Not clear |
| Lu Zhou, Haixu Hu, Bing Qin, Qiaoqiao Zhu, Zhiyu Qia. Brain activity differences between susceptible and non-susceptible populations under visually induced motion sickness based on sensor-space and source-space analyses. Brain research. 2023-07-01. PMID:37393010. |
under vs, delta and theta energies were significantly increased in vimssg and vimsrg, while alpha and beta energies were only significantly increased in vimsrg. |
2023-07-01 |
2023-08-14 |
human |
| Parham Sendi, Nadja Widmer, Mattia Branca, Marc Thierstein, Annina Elisabeth Büchi, Dominik Güntensperger, Manuel Raphael Blum, Rossella Baldan, Caroline Tinguely, Dik Heg, Elitza S Theel, Elie Berbari, Aaron J Tande, Andrea Endimiani, Peter Gowland, Christoph Niederhause. Do quantitative levels of antispike-IgG antibodies aid in predicting protection from SARS-CoV-2 infection? Results from a longitudinal study in a police cohort. Journal of medical virology. vol 95. issue 7. 2023-06-30. PMID:37386901. |
higher antibody levels were significantly associated with protection from sars-cov-2 infection (0.89, 95% confidence interval [ci] 0.82-0.97), and the association was higher during the time period when omicron was predominantly circulating compared with the ones when alpha and delta variants were predominant (adjusted hazard ratio for interaction 0.66, 95% ci 0.53-0.84). |
2023-06-30 |
2023-08-14 |
Not clear |
| Matthieu Vilain, Stéphane Aris-Broso. Machine Learning Algorithms Associate Case Numbers with SARS-CoV-2 Variants Rather Than with Impactful Mutations. Viruses. vol 15. issue 6. 2023-06-28. PMID:37376526. |
to test this hypothesis, we implemented simple models to predict future case numbers based on the genomic sequences of the alpha and delta variants, which were co-circulating in texas and minnesota early during the pandemic. |
2023-06-28 |
2023-08-14 |
Not clear |
| Abed K K Al-Mohammedawi, Enayat Anvari, Abolfazl Fate. Relationship between CDX2 rs11568820 and EcoRV rs4516035 polymorphisms on the vitamin D receptor gene with susceptibility to different SARS-CoV-2 variants. Cell biology international. 2023-06-27. PMID:37369952. |
the results indicated the rate of covid-19 mortality was associated with cdx2 rs11568820 aa and ga genotypes in the delta variant and with cdx2 rs11568820 aa in the omicron ba.5 variant, while no association was shown in the alpha variant. |
2023-06-27 |
2023-08-14 |
Not clear |
| Abed K K Al-Mohammedawi, Enayat Anvari, Abolfazl Fate. Relationship between CDX2 rs11568820 and EcoRV rs4516035 polymorphisms on the vitamin D receptor gene with susceptibility to different SARS-CoV-2 variants. Cell biology international. 2023-06-27. PMID:37369952. |
therefore, the rate of covid-19 mortality was associated with ecorv rs4516035 tc and cc genotypes in the delta variant, while no association was shown in the alpha and omicron ba.5 variants. |
2023-06-27 |
2023-08-14 |
Not clear |