| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Saketh Merugu, Logan T Kearney, Jong K Keum, Amit K Naskar, Jamal Ansary, Aidan Herbert, Monsur Islam, Kunal Mondal, Anju Gupt. Investigating Permselectivity in PVDF Mixed Matrix Membranes Using Experimental Optimization, Machine Learning Segmentation, and Statistical Forecasting. ACS omega. vol 9. issue 26. 2024-07-08. PMID:38973877. |
the membranes were fabricated by a bottom-up phase inversion method to incorporate a range of concentrations of cnf and cu + cnf particles in the polymer matrix to tune the porosity, crystallinity, and wettability of the membranes. |
2024-07-08 |
2024-07-11 |
Not clear |
| Qinpeng Chen, Qiwen Pan, Shiliang Kang, Zhenlu Cai, Shengda Ye, Puxian Xiong, Zhongmin Yang, Jianrong Qiu, Guoping Don. Transparent nanocrystal-in-glass composite fibers for multifunctional temperature and pressure sensing. Fundamental research. vol 4. issue 3. 2024-06-27. PMID:38933183. |
to solve this problem, in this study, we present a bottom-up strategy to design and fabricate thermally drawn multifunctional fiber sensors by incorporating functional nanocrystals with temperature and pressure fluorescence responses into a transparent glass matrix. |
2024-06-27 |
2024-06-29 |
Not clear |
| Michael J Buckenmeyer, Elizabeth A Brooks, Madison S Taylor, Liping Yang, Ronald J Holewinski, Thomas J Meyer, Mélissa Galloux, Marcial Garmendia-Cedillos, Thomas J Pohida, Thorkell Andresson, Brad St Croix, Matthew T Wol. Engineering Tumor Stroma Morphogenesis Using Dynamic Cell-Matrix Spheroid Assembly. bioRxiv : the preprint server for biology. 2024-06-21. PMID:38903106. |
the tumor microenvironment consists of resident tumor cells organized within a compositionally diverse, three-dimensional (3d) extracellular matrix (ecm) network that cannot be replicated in vitro using bottom-up synthesis. |
2024-06-21 |
2024-06-23 |
mouse |
| Deanna L Plubell, Eric Huang, Sandra E Spencer, Kathleen Poston, Thomas J Montine, Michael J MacCos. Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer. bioRxiv : the preprint server for biology. 2024-06-10. PMID:38853953. |
to develop a targeted bottom-up proteomics assay, peptides must be evaluated as proxies for the measurement of a protein or proteoform in a biological matrix. |
2024-06-10 |
2024-06-14 |
Not clear |
| J Rudolf-Scholik, D Lilek, M Maier, T Reischenböck, C Maisl, J Allram, B Herbinger, J Rechthale. Increasing protein identifications in bottom-up proteomics of T. castaneum - Exploiting synergies of protein biochemistry and bioinformatics. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences. vol 1240. 2024-05-17. PMID:38759531. |
our work with tribolium castaneum larvae demonstrates that sometimes - depending on matrix and research question - more complex and time-consuming sample preparation can be advantageous for isolation and identification of additional proteins in bottom-up proteomics. |
2024-05-17 |
2024-05-27 |
Not clear |
| Asunción Fernández, Vanda Godinho, José Ávila, M Carmen Jiménez de Haro, Dirk Hufschmidt, Jennifer López-Viejobueno, G Eduardo Almanza-Vergara, F Javier Ferrer, Julien L Colaux, Stephane Lucas, M Carmen Asensi. Synergistic Effect of He for the Fabrication of Ne and Ar Gas-Charged Silicon Thin Films as Solid Targets for Spectroscopic Studies. Nanomaterials (Basel, Switzerland). vol 14. issue 8. 2024-04-26. PMID:38668221. |
sputtering of silicon in a he magnetron discharge (ms) has been reported as a bottom-up procedure to obtain he-charged silicon films (i.e., he nanobubbles encapsulated in a silicon matrix). |
2024-04-26 |
2024-04-28 |
Not clear |
| Annachiara Scalzone, Giorgia Imparato, Francesco Urciuolo, Paolo Antonio Nett. Bioprinting of human dermal microtissues precursors as building blocks for endogenous in vitro connective tissue manufacturing. Biofabrication. 2024-04-04. PMID:38574552. |
building upon our expertise in developing competent three-dimensional tissue equivalents (e.g., skin, gut, cervix), we established a two-step bottom-up approach involving the dynamic assembly of microtissue precursors (μtps) to generate macroscopic functional tissue composed of cell-secreted extracellular matrix (ecm). |
2024-04-04 |
2024-04-07 |
human |
| Hao Dong, Fen Hu, Xuehe Ma, Jianyu Yang, Leiting Pan, Jingjun X. Collective Cell Radial Ordered Migration in Spatial Confinement. Advanced science (Weinheim, Baden-Wurttemberg, Germany). 2024-03-23. PMID:38520715. |
combining bottom-up cell-to-extracellular matrix (ecm) interaction strategy, numerical simulations based on a developed mechanical model well reproduce and explain above observations. |
2024-03-23 |
2024-03-26 |
Not clear |
| Oliver Cameron, Joana F Neves, Eileen Gentlema. Listen to Your Gut: Key Concepts for Bioengineering Advanced Models of the Intestine. Advanced science (Weinheim, Baden-Wurttemberg, Germany). 2023-11-27. PMID:38009508. |
this review dissects the cellular and matrix components of the intestine and discusses strategies to replicate them in vitro using principles drawing from bottom-up biological self-organization and top-down bioengineering. |
2023-11-27 |
2023-11-29 |
human |
| Siqi Wang, Xiaosheng Yu, Wenzhuo Jia, Jianning Chi, Pengfei Lv, Junxiang Wang, Chengdong W. Optic disc detection based on fully convolutional network and weighted matrix recovery model. Medical & biological engineering & computing. 2023-09-05. PMID:37668892. |
secondly, the top-down semantic prior information provided by fcn and bottom-up background prior information of the optic disc region are used to jointly construct the prior information weighting matrix, which more accurately guides the decomposition of the feature matrix into a sparse matrix representing the optic disc and a low-rank matrix representing the background. |
2023-09-05 |
2023-09-07 |
human |
| Ashley Beasley-Green, N Alan Hecker. Estimation of measurement uncertainty for the quantification of protein by ID-LC-MS/MS. Analytical and bioanalytical chemistry. 2023-05-25. PMID:37231301. |
using a bottom-up approach, which is the model outlined in the "guide to the expression of uncertainty of measurement" (gum), we evaluated the uncertainty components of a ms-based measurement procedure for a protein biomarker in a complex matrix. |
2023-05-25 |
2023-08-14 |
human |
| Anna Luparelli, Ilario Losito, Elisabetta De Angelis, Rosa Pilolli, Linda Monac. Multi-Target Detection of Nuts and Peanuts as Hidden Allergens in Bakery Products through Bottom-Up Proteomics and High-Resolution Mass Spectrometry. Foods (Basel, Switzerland). vol 12. issue 4. 2023-02-25. PMID:36832800. |
specifically, allergenic proteins of the six ingredients were used as the analytical targets, and the lc-ms responses of selected peptides resulting from their tryptic digestion, after extraction from the bakery product matrix, were exploited for quantification, following a bottom-up approach typical of proteomics. |
2023-02-25 |
2023-08-14 |
Not clear |
| C Russo, L Wyld, M Da Costa Aubreu, C S Bury, C Heaton, L M Cole, S Frances. Non-invasive screening of breast cancer from fingertip smears-a proof of concept study. Scientific reports. vol 13. issue 1. 2023-02-01. PMID:36725900. |
this proof-of-concept study, combining bottom-up proteomics with matrix assisted laser desorption ionisation mass spectrometry (maldi ms) detection, explores the potential for a non-invasive technique for the early detection of breast cancer from fingertip smears. |
2023-02-01 |
2023-08-14 |
Not clear |
| Sara Molinari, Robert F Tesoriero, Dong Li, Swetha Sridhar, Rong Cai, Jayashree Soman, Kathleen R Ryan, Paul D Ashby, Caroline M Ajo-Frankli. A de novo matrix for macroscopic living materials from bacteria. Nature communications. vol 13. issue 1. 2022-09-21. PMID:36130968. |
while bottom-up assembly of macroscopic elms with a de novo matrix would offer the greatest control over material properties, we lack the ability to genetically encode a protein matrix that leads to collective self-organization. |
2022-09-21 |
2023-08-14 |
Not clear |
| Jinwoo Kim, Ji Young Kim, Eun Soo Par. Pushing the Boundaries of Multicomponent Alloy Nanostructures: Hybrid Approach of Liquid Phase Separation and Selective Leaching Processes. Accounts of chemical research. 2022-06-17. PMID:35713467. |
extracting those alloy nanophases from the matrix could provide an alternative way to fabricate novel mca nanostructures.in this account, we describe a hybrid approach of metallurgical bottom-up and chemical top-down processes for fabricating mca nanostructures including nanoparticles and nanofoams. |
2022-06-17 |
2023-08-14 |
Not clear |
| Huie Zhu, Shunsuke Yamamoto, Jun Matsui, Tokuji Miyashita, Masaya Mitsuish. Resistive non-volatile memories fabricated with poly(vinylidene fluoride)/poly(thiophene) blend nanosheets. RSC advances. vol 8. issue 15. 2022-05-11. PMID:35542040. |
because of the precisely controllable bottom-up construction, semiconductive p3cpent were well dispersed into the ferroelectric pvdf matrix. |
2022-05-11 |
2023-08-13 |
Not clear |
| Katie Kennedy, Laura Cole, Matthias Witt, Mark Sealey, Simona Frances. Forensic Discrimination of Differentially Sourced Animal Blood Using a Bottom-Up Proteomics Based MALDI MS Approach. Molecules (Basel, Switzerland). vol 27. issue 7. 2022-04-12. PMID:35408438. |
recently published work has reported the development and application of a bottom-up proteomic approach to distinguish between human and animal blood (down to animal species level), by rapid screening using matrix assisted laser desorption ionisation mass spectrometry (maldi ms). |
2022-04-12 |
2023-08-13 |
human |
| Maxime den Ridder, Ewout Knibbe, Wiebeke van den Brandeler, Pascale Daran-Lapujade, Martin Pabs. A systematic evaluation of yeast sample preparation protocols for spectral identifications, proteome coverage and post-isolation modifications. Journal of proteomics. 2022-03-30. PMID:35351659. |
here, we performed a systematic comparison of sample preparation protocols using a matrix of different conditions commonly applied in whole cell lysate, bottom-up proteomics experiments. |
2022-03-30 |
2023-08-13 |
Not clear |
| Piotr Szefer, Kenneth Molem, Austin Sau, Vojtech Novotn. Weak effects of birds, bats, and ants on their arthropod prey on pioneering tropical forest gap vegetation. Ecology. 2022-03-24. PMID:35322403. |
possible explanations are strong bottom-up control, a low activity of the higher order predators, especially birds, possibly also bats, in gaps, and continuous influx of herbivores from surrounding mature forest matrix. |
2022-03-24 |
2023-08-13 |
Not clear |
| Benjamin J Bielajew, Ryan P Donahue, Elliott K Lamkin, Jerry C Hu, Vincent C Hascall, Kyriacos A Athanasio. Proteomic, Mechanical, and Biochemical Characterization of Cartilage Development. Acta biomaterialia. 2022-03-02. PMID:35235865. |
this analysis shows that bottom-up proteomics is a critical tool in tissue characterization, especially toward developing a deeper understanding of matrix composition and development in tissue engineering studies. |
2022-03-02 |
2023-08-13 |
Not clear |