All Relations between bottom-up and matrix compartment

Publication Sentence Publish Date Extraction Date Species
Siqi Wang, Xiaosheng Yu, Wenzhuo Jia, Jianning Chi, Pengfei Lv, Junxiang Wang, Chengdong W. Optic disc detection based on fully convolutional network and weighted matrix recovery model. Medical & biological engineering & computing. 2023-09-05. PMID:37668892. secondly, the top-down semantic prior information provided by fcn and bottom-up background prior information of the optic disc region are used to jointly construct the prior information weighting matrix, which more accurately guides the decomposition of the feature matrix into a sparse matrix representing the optic disc and a low-rank matrix representing the background. 2023-09-05 2023-09-07 human
Ashley Beasley-Green, N Alan Hecker. Estimation of measurement uncertainty for the quantification of protein by ID-LC-MS/MS. Analytical and bioanalytical chemistry. 2023-05-25. PMID:37231301. using a bottom-up approach, which is the model outlined in the "guide to the expression of uncertainty of measurement" (gum), we evaluated the uncertainty components of a ms-based measurement procedure for a protein biomarker in a complex matrix. 2023-05-25 2023-08-14 human
Anna Luparelli, Ilario Losito, Elisabetta De Angelis, Rosa Pilolli, Linda Monac. Multi-Target Detection of Nuts and Peanuts as Hidden Allergens in Bakery Products through Bottom-Up Proteomics and High-Resolution Mass Spectrometry. Foods (Basel, Switzerland). vol 12. issue 4. 2023-02-25. PMID:36832800. specifically, allergenic proteins of the six ingredients were used as the analytical targets, and the lc-ms responses of selected peptides resulting from their tryptic digestion, after extraction from the bakery product matrix, were exploited for quantification, following a bottom-up approach typical of proteomics. 2023-02-25 2023-08-14 Not clear
C Russo, L Wyld, M Da Costa Aubreu, C S Bury, C Heaton, L M Cole, S Frances. Non-invasive screening of breast cancer from fingertip smears-a proof of concept study. Scientific reports. vol 13. issue 1. 2023-02-01. PMID:36725900. this proof-of-concept study, combining bottom-up proteomics with matrix assisted laser desorption ionisation mass spectrometry (maldi ms) detection, explores the potential for a non-invasive technique for the early detection of breast cancer from fingertip smears. 2023-02-01 2023-08-14 Not clear
Sara Molinari, Robert F Tesoriero, Dong Li, Swetha Sridhar, Rong Cai, Jayashree Soman, Kathleen R Ryan, Paul D Ashby, Caroline M Ajo-Frankli. A de novo matrix for macroscopic living materials from bacteria. Nature communications. vol 13. issue 1. 2022-09-21. PMID:36130968. while bottom-up assembly of macroscopic elms with a de novo matrix would offer the greatest control over material properties, we lack the ability to genetically encode a protein matrix that leads to collective self-organization. 2022-09-21 2023-08-14 Not clear
Jinwoo Kim, Ji Young Kim, Eun Soo Par. Pushing the Boundaries of Multicomponent Alloy Nanostructures: Hybrid Approach of Liquid Phase Separation and Selective Leaching Processes. Accounts of chemical research. 2022-06-17. PMID:35713467. extracting those alloy nanophases from the matrix could provide an alternative way to fabricate novel mca this account, we describe a hybrid approach of metallurgical bottom-up and chemical top-down processes for fabricating mca nanostructures including nanoparticles and nanofoams. 2022-06-17 2023-08-14 Not clear
Huie Zhu, Shunsuke Yamamoto, Jun Matsui, Tokuji Miyashita, Masaya Mitsuish. Resistive non-volatile memories fabricated with poly(vinylidene fluoride)/poly(thiophene) blend nanosheets. RSC advances. vol 8. issue 15. 2022-05-11. PMID:35542040. because of the precisely controllable bottom-up construction, semiconductive p3cpent were well dispersed into the ferroelectric pvdf matrix. 2022-05-11 2023-08-13 Not clear
Katie Kennedy, Laura Cole, Matthias Witt, Mark Sealey, Simona Frances. Forensic Discrimination of Differentially Sourced Animal Blood Using a Bottom-Up Proteomics Based MALDI MS Approach. Molecules (Basel, Switzerland). vol 27. issue 7. 2022-04-12. PMID:35408438. recently published work has reported the development and application of a bottom-up proteomic approach to distinguish between human and animal blood (down to animal species level), by rapid screening using matrix assisted laser desorption ionisation mass spectrometry (maldi ms). 2022-04-12 2023-08-13 human
Maxime den Ridder, Ewout Knibbe, Wiebeke van den Brandeler, Pascale Daran-Lapujade, Martin Pabs. A systematic evaluation of yeast sample preparation protocols for spectral identifications, proteome coverage and post-isolation modifications. Journal of proteomics. 2022-03-30. PMID:35351659. here, we performed a systematic comparison of sample preparation protocols using a matrix of different conditions commonly applied in whole cell lysate, bottom-up proteomics experiments. 2022-03-30 2023-08-13 Not clear
Piotr Szefer, Kenneth Molem, Austin Sau, Vojtech Novotn. Weak effects of birds, bats, and ants on their arthropod prey on pioneering tropical forest gap vegetation. Ecology. 2022-03-24. PMID:35322403. possible explanations are strong bottom-up control, a low activity of the higher order predators, especially birds, possibly also bats, in gaps, and continuous influx of herbivores from surrounding mature forest matrix. 2022-03-24 2023-08-13 Not clear
Benjamin J Bielajew, Ryan P Donahue, Elliott K Lamkin, Jerry C Hu, Vincent C Hascall, Kyriacos A Athanasio. Proteomic, Mechanical, and Biochemical Characterization of Cartilage Development. Acta biomaterialia. 2022-03-02. PMID:35235865. this analysis shows that bottom-up proteomics is a critical tool in tissue characterization, especially toward developing a deeper understanding of matrix composition and development in tissue engineering studies. 2022-03-02 2023-08-13 Not clear
Kiheon Baek, Alexander D Noblett, Pengyu Ren, Laura J Sugg. Design and Characterization of Nucleopeptides for Hydrogel Self-Assembly. ACS applied bio materials. vol 2. issue 7. 2022-01-15. PMID:35030815. self-assembling peptides can be used in a bottom-up approach to build hydrogels that are similar to the extracellular matrix at both structural and functional levels. 2022-01-15 2023-08-13 Not clear
Philip Boucher, Clair Goug. Mapping the ethical landscape of carbon capture and storage. Poiesis & praxis : international journal of ethics of science and technology assessment. vol 9. issue 3-4. 2021-10-21. PMID:23226998. this imitates a bottom-up analytic structure in the absence of the direct participation of actors, culminating in the construction of a map of the ethical landscape; a high-resolution ethical matrix of coded interpretations of various actors' ethical framings of the technology. 2021-10-21 2023-08-12 Not clear
Hai-Jun Su, Hongliang Shi, Jingjun Y. A Symbolic Formulation for Analytical Compliance Analysis and Synthesis of Flexure Mechanisms. Journal of mechanical design (New York, N.Y. : 1990). vol 134. issue 5. 2021-10-21. PMID:23904747. at last, we use a bottom-up approach to obtain the compliance/stiffness matrix for the overall mechanism. 2021-10-21 2023-08-12 Not clear
Francesco Branda, Aurelio Bifulco, Dieter Jehnichen, Dambarudhar Parida, Robin Pauer, Jessica Passaro, Sabyasachi Gaan, Doris Pospiech, Massimo Durant. Structure and Bottom-up Formation Mechanism of Multisheet Silica-Based Nanoparticles Formed in an Epoxy Matrix through an Langmuir : the ACS journal of surfaces and colloids. vol 37. issue 29. 2021-09-01. PMID:34275300. structure and bottom-up formation mechanism of multisheet silica-based nanoparticles formed in an epoxy matrix through an organic/inorganic hybrid composite materials with the dispersed phases in sizes down to a few tens of nanometers raised very great interest. 2021-09-01 2023-08-13 Not clear
Costantino Casale, Giorgia Imparato, Claudia Mazio, Paolo A Netti, Francesco Urciuol. Geometrical confinement controls cell, ECM and vascular network alignment during the morphogenesis of 3D bioengineered human connective tissues. Acta biomaterialia. vol 131. 2021-08-31. PMID:34144214. here, we show a new method to align de novo synthesized extracellular matrix components in bioengineered connective tissues obtained by means of a bottom-up tissue engineering approach. 2021-08-31 2023-08-13 human
Lu\\xc3\\xads P Ferreira, V\\xc3\\xadtor M Gaspar, Lu\\xc3\\xads Mendes, Iola F Duarte, Jo\\xc3\\xa3o F Man. Organotypic 3D decellularized matrix tumor spheroids for high-throughput drug screening. Biomaterials. vol 275. 2021-08-26. PMID:34186236. to address this, herein we employed ultra-low adhesion surfaces for bioengineering organotypic 3d metastatic breast cancer-fibroblast models enriched with decm microfibrillar fragments, as a bottom-up strategy to include major matrix components and their associated biomolecular cues during the early stages of 3d microtissue spheroids assembly, simulating pre-existing ecm presence in the in vivo setting. 2021-08-26 2023-08-13 Not clear
Jingwen Zhang, Song Li, Zhengyi Zhu, Zhenwang Wu, Jiuxing Zhan. Enhancing the thermoelectric properties of SnTe Dalton transactions (Cambridge, England : 2003). vol 50. issue 30. 2021-08-04. PMID:34259288. in this work, an amorphous carbon core-shell-coated pbte nanostructure prepared by a "bottom-up" method is first incorporated into the sn1-ysbyte matrix to enhance the thermoelectric performance of snte. 2021-08-04 2023-08-13 Not clear
Chih-Yu Wu, Ting-Ying Wu, Zhen-Yu Guan, Peng-Yuan Wang, Yen-Ching Yang, Chao-Wei Huang, Tzu-Hung Lin, Hsien-Yeh Che. Vapor-phased fabrication and modulation of cell-laden scaffolding materials. Nature communications. vol 12. issue 1. 2021-06-15. PMID:34099701. bottom-up approaches using building blocks of modules to fabricate scaffolds for tissue engineering applications have enabled the fabrication of structurally complex and multifunctional materials allowing for physical and chemical flexibility to better mimic the native extracellular matrix. 2021-06-15 2023-08-13 Not clear
Assal Daneshgar, Oliver Klein, Grit Nebrich, Marie Weinhart, Peter Tang, Alexander Arnold, Imran Ullah, Julian Pohl, Simon Moosburner, Nathanael Raschzok, Benjamin Str\\xc3\\xbccker, Marcus Bahra, Johann Pratschke, Igor M Sauer, Karl H Hillebrand. The human liver matrisome - Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches. Biomaterials. vol 257. 2021-05-14. PMID:32739662. here we present a thorough analysis of the native human liver proteomic landscape using decellularization and defatting protocols to create extracellular matrix scaffolds of natural origin that can further be used in both bottom-up and top-down approaches in tissue engineering based organ replacements. 2021-05-14 2023-08-13 human