| Publication |
Sentence |
Publish Date |
Extraction Date |
Species |
| Jehad Zuhair Tayyeb, Shibam Mondal, Md Anisur Rahman, Swapon Kumar, Imren Bayıl, Shopnil Akash, Md Sarowar Hossain, Taha Alqahtani, Magdi E A Zaki, Jonas Ivan Nobre Oliveir. Identification of Helicobacter pylori-carcinogenic TNF-alpha-inducing protein inhibitors via daidzein derivatives through computational approaches. Journal of cellular and molecular medicine. vol 28. issue 9. 2024-05-02. PMID:38693868. |
various parameters were analysed, including root-mean-square deviation (rmsd), root-mean-square fluctuation (rmsf), radius of gyration (rg), hydrogen bond analysis, principal component analysis (pca) and dynamic cross-correlation matrix (dccm). |
2024-05-02 |
2024-05-04 |
Not clear |
| Sukumar Kalvapudi, Subeikshanan Venkatesan, Rishab Belavadi, Varun Anand, Venkatesh S Madhugir. The Author-Level Metrics Study: An Analysis of the Traditional and Alternative Metrics of Scholarly Impact for Neurosurgical Authors. Cureus. vol 14. issue 7. 2022-08-25. PMID:36004033. |
conclusions a composite author-level matrix with ahi, rg score, research interest score, and the number of rg followers could be used to generate an "impact matrix" to describe the scholarly and real-world impact of a clinician's work. |
2022-08-25 |
2023-08-14 |
Not clear |
| Dimitrios Kaloudas, Robert Penchovsk. An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms. Computers in biology and medicine. vol 145. 2022-04-10. PMID:35398809. |
allosteric ribozyme sequences generated by the rg can be used as a matrix for the ifrg program. |
2022-04-10 |
2023-08-13 |
Not clear |
| Ammar Jabali, Anne Hoffrichter, Ana Uzquiano, Fabio Marsoner, Ruven Wilkens, Marco Siekmann, Bettina Bohl, Andrea C Rossetti, Sandra Horschitz, Philipp Koch, Fiona Francis, Julia Ladewi. Human cerebral organoids reveal progenitor pathology in EML1-linked cortical malformation. EMBO reports. 2022-03-15. PMID:35289477. |
single-cell rna sequencing shows an upregulation of basal radial glial (rg) markers and human-specific extracellular matrix components in the ectopic cell population. |
2022-03-15 |
2023-08-13 |
human |
| Christian B Jepsen, Fedor K Popo. Homoclinic Renormalization Group Flows, or When Relevant Operators Become Irrelevant. Physical review letters. vol 127. issue 14. 2021-10-18. PMID:34652210. |
at a number of points in the space of m and n we find that the model exhibits an interesting phenomenon: at these points the rg flow possesses a fixed point located at real values of the coupling constants g_{i} but with a stability matrix (∂β_{i}/∂g_{j}) that is not diagonalizable and has a jordan block of size two with zero eigenvalue. |
2021-10-18 |
2023-08-13 |
Not clear |
| Vidushi Sharma, Sharad Wakod. Investigating the role of N-terminal domain in phosphodiesterase 4B-inhibition by molecular dynamics simulation. Journal of biomolecular structure & dynamics. vol 39. issue 12. 2021-08-11. PMID:32552529. |
root mean square deviation (rmsd), radius of gyration (rg), root mean square fluctuation (rmsf), principal component analysis (pca), dynamical cross-correlation matrix (dccm) analysis, secondary structure analysis and residue interaction mapping were investigated to establish rational. |
2021-08-11 |
2023-08-13 |
Not clear |
| L Mancini, C Manilia, F Casalena, M Capogreco, G Marzo, E Marchett. Histomorphometric evaluation of bovine bone and equine bone matrix in maxillary sinus floor augmentation: a systematic review. Journal of biological regulators and homeostatic agents. vol 34. issue 3 Suppl. 1. 2020-11-03. PMID:32618176. |
the use of equine bone matrix (ebm) was assessed in four different studies including an rct, a cross-sectional study and two case series; a mean percentage calculated by the extracted data of the four studies was estimated with newly formed bone (nfb 44.51%), residual grafts (rg 17.24%) and soft tissue percentage (sf 36.62%). |
2020-11-03 |
2023-08-13 |
cattle |
| Ashish Kumar Agrahari, P Sneha, C George Priya Doss, R Siva, Hatem Zaye. A profound computational study to prioritize the disease-causing mutations in PRPS1 gene. Metabolic brain disease. vol 33. issue 2. 2018-12-19. PMID:29047041. |
we used the root mean square deviation (rmsd), radius of gyration (rg), solvent accessibility surface area (sasa), covariance matrix, principal component analysis (pca), free energy landscape (fel), and secondary structure analysis to assess the structural changes in the protein upon mutation. |
2018-12-19 |
2023-08-13 |
Not clear |
| Attila Kovács, Joanna E Rod. Modelling the matrix shift on the vibrational frequency of ThO by DFT-D3 calculations. The Journal of chemical physics. vol 146. issue 12. 2018-06-08. PMID:28388137. |
continuum solvation models considerably overestimated the effect of rg matrices both when the whole matrix was treated by the model and when the first shell was treated explicitly and the rest with a continuum solvation model. |
2018-06-08 |
2023-08-13 |
Not clear |
| Attila Kovács, Joanna E Rod. Modelling the matrix shift on the vibrational frequency of ThO by DFT-D3 calculations. The Journal of chemical physics. vol 146. issue 12. 2018-06-08. PMID:28388137. |
benchmark calculations with a goal to find dispersion-corrected dft-d3 methods suitable for a reliable estimation of matrix shifts on the vibrational frequency were carried out on the tho molecule in three rare gas (rg = ne, ar, and kr) matrices. |
2018-06-08 |
2023-08-13 |
Not clear |
| Siddharth Sinha, Sharad Verma, Aditi Singh, Pallavi Somvanshi, Abhinav Grove. Simulation Based Investigation of Deleterious nsSNPs in ATXN2 Gene and Its Structural Consequence Toward Spinocerebellar Ataxia. Journal of cellular biochemistry. vol 119. issue 1. 2018-03-14. PMID:28612427. |
analysis based on rmsd, rmsf, rg, sasa, number of hydrogen bonds (nh bonds), covariance matrix trace, projection analysis for eigen vector demonstrated a significant instability and conformation along with rise in mutant flexibility values in comparison to the apo form of ataxin-2 protein. |
2018-03-14 |
2023-08-13 |
Not clear |
| Christopher B Cole, Majid Nikpay, Alexandre F R Stewart, Ruth McPherso. Increased genetic risk for obesity in premature coronary artery disease. European journal of human genetics : EJHG. vol 24. issue 4. 2016-12-13. PMID:26220701. |
we then estimated the genetic correlation between these bmi and cad (rg) by relating the pairwise genetic similarity matrix to a phenotypic covariance matrix between these two traits. |
2016-12-13 |
2023-08-13 |
human |
| Nidhi Joshi, Kamla Rawat, H B Bohida. Characterization of microstructure, viscoelasticity, heterogeneity and ergodicity in pectin-laponite-CTAB-calcium nanocomposite hydrogels. Carbohydrate polymers. vol 136. 2016-09-06. PMID:26572352. |
the ratio rg/rh (rg and rh are radius of gyration and hydrodynamic radius respectively) determined from light scattering data revealed the presence of random coils of pectin chains inside the gel matrix. |
2016-09-06 |
2023-08-13 |
Not clear |
| Wei He, Mengmeng Wu, Shiqing Huang, Lifang Yi. Matrix tablets for sustained release of repaglinide: Preparation, pharmacokinetics and hypoglycemic activity in beagle dogs. International journal of pharmaceutics. vol 478. issue 1. 2016-08-30. PMID:25434592. |
the present study was conducted to develop a hydrophilic sustained release matrix tablet for rg with the aims of prolonging its action time, reducing the required administration times and side effects and improving patient adherence. |
2016-08-30 |
2023-08-13 |
Not clear |
| Wei He, Mengmeng Wu, Shiqing Huang, Lifang Yi. Matrix tablets for sustained release of repaglinide: Preparation, pharmacokinetics and hypoglycemic activity in beagle dogs. International journal of pharmaceutics. vol 478. issue 1. 2016-08-30. PMID:25434592. |
in conclusion, sustained rg release and prolonged action were observed with present matrix tablets, which therefore provide a promising formulation for t2d patients who require long-term treatment. |
2016-08-30 |
2023-08-13 |
Not clear |
| Wei He, Shijing Huang, Chunyan Zhou, Lin Cao, Jing Yao, Jianping Zhou, Guangji Wang, Lifang Yi. Bilayer matrix tablets for prolonged actions of metformin hydrochloride and repaglinide. AAPS PharmSciTech. vol 16. issue 2. 2015-12-09. PMID:25319054. |
herein, a bilayer matrix tablet that aimed at continuously releasing both mh and rg over time was developed, in which the two drugs were formulated into two separated layers. |
2015-12-09 |
2023-08-13 |
Not clear |
| Wei He, Shijing Huang, Chunyan Zhou, Lin Cao, Jing Yao, Jianping Zhou, Guangji Wang, Lifang Yi. Bilayer matrix tablets for prolonged actions of metformin hydrochloride and repaglinide. AAPS PharmSciTech. vol 16. issue 2. 2015-12-09. PMID:25319054. |
summarily, the bilayer matrix tablets sustained both mh and rg release over time, thereby prolonging the actions for diabetic therapy and producing better health outcomes. |
2015-12-09 |
2023-08-13 |
Not clear |
| John T King, Changqian Yu, William L Wilson, Steve Granic. Super-resolution study of polymer mobility fluctuations near c*. ACS nano. vol 8. issue 9. 2015-10-15. PMID:25148053. |
the polystyrene serving as the tracer probe (670 kg mol(-1), radius of gyration rg ≈ 35 nm, end-labeled with a bodipy derivative chromophore) was dissolved in toluene at room temperature (good solvent) and mixed with matrix polystyrene (3,840 kg mol(-1), rg ≈ 97 nm, mw/mn = 1.04) whose concentration was varied from dilute to more than 10c*. |
2015-10-15 |
2023-08-13 |
Not clear |
| Marcin Gronowski, Michał Turowski, Robert Koło. Quantum chemical study on HKrC₅N, HXeC₅N, and related rare gas compounds. The journal of physical chemistry. A. vol 119. issue 11. 2015-05-12. PMID:25535950. |
the recent identification of hrgc5n (rg = kr, xe) in a cryogenic matrix calls for an in-depth theoretical study on these compounds. |
2015-05-12 |
2023-08-13 |
Not clear |
| Miriam Fritsche, Ras B Pandey, Barry L Farmer, Dieter W Heerman. Variation in structure of a protein (H2AX) with knowledge-based interactions. PloS one. vol 8. issue 5. 2014-02-18. PMID:23741333. |
the increase in rg is followed by a decay on raising the temperature with a maximum at a characteristic value, tc , which depends on the knowledge-based contact matrix, tcbfkv ≤ tcmj ≤ tcbt . |
2014-02-18 |
2023-08-12 |
Not clear |